Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDALFNYKEFVRLSHE----GNIKYEKLKVPKHTDLVDTASQRNNHVYLIVEGFVSISMNP--QSNSIYTVLGKGSFVNYYSLFQGNVDDFLFTAISPCTIYKYSFKDLEYFLSMFPENFGFQFFIMRDLARHAFF----KSLFAETSSSDKLELSFSNMGKLHGTLYEKDSVILPKEMRTSTIAAYSNLSKSSFYKQLTLLKEHGKIWKKGKEW-VVKDKGLYNYVKVRQFDD
3I54 Chain:A ((30-248))
---LARAGIFQGVEPSAIAA-----QPVDFPRGHTVFAEGE-PGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRP---EISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEG-GALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSERLARRA-------
General information:
TITO was launched using:
RESULT:
Template:
3I54.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93422 for 1499 contacts (-62.3/contact) +
2D Compatibility (PS) -21496 + (NN) -3105 + (LL) 1180
1D Compatibility (HY) -6800 + (ID) 1650
Total energy: -125293.0 ( -83.58 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_3I54.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3I54-query.scw
PDB file :
Tito_Scwrl_3I54.pdb
: