Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLFFEEWGPILWQGFLETLTMTGITLVISLAIGLPLGVFLTLTRKGG-QSENLVAYSILNWVINILRSLPFIILLFLMIP-VTRFVVGTTIGIQGVIMPLVVFTAPYIARLMESALLEVDRGVVEAYQAMGISTPKIIWSVVIREARSGIVLGLTIATIGLIGATAMAGLVGAGGL---GTIAYQYGFQRFEPTVMYTTIIILIIMVQALQSFGNFLSRRLKKD
4YMV Chain:D ((10-215))
------KYTPLFISGLIMTLKLT----FLAVTIGVLMGLFIALMKMSSIKPIKLVASS----YIEVIRGTPLLVQLLLIYNGLMQFGMNIPAFTAGV-SALAINSSAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKESAIVSVIGFADLTRQADIIQSVTYRYFEPYIIIAA--IYFVMTLTFSKLLSLFERRLR--
General information:
TITO was launched using:
RESULT:
Template:
4YMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -186343 for 1449 contacts (-128.6/contact) +
2D Compatibility (PS) -20560 + (NN) 434 + (LL) 2040
1D Compatibility (HY) -23200 + (ID) 2450
Total energy: -230079.0 ( -158.78 by residue)
QMean score : 0.356
(partial model without unconserved sides chains):
PDB file :
Tito_4YMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMV-query.scw
PDB file :
Tito_Scwrl_4YMV.pdb
: