Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VIYYICALYTFISALVSFGFSLDALLKSRKVNGDALINAKYAVSRSLSLLIVALGLFIFKSDAFLVALSLVMIGAQLFDGIIGIKISTFKTVGPLLTAVGNVIMLILFLTI
2EKK Chain:A ((13-30))
-----------LQQLMDMGFTREHAMEAL----------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2EKK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12568 for 86 contacts (-146.1/contact) +
2D Compatibility (PS) -1980 + (NN) -1087 + (LL) 9076
1D Compatibility (HY) -1600 + (ID) 150
Total energy: -8309.0 ( -96.62 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_2EKK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EKK-query.scw
PDB file :
Tito_Scwrl_2EKK.pdb
: