Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSHRLLGRVMLLLGALGVILTMSFSYVAAAEKPNIDKPVKGLEQTEKAIVADDYNKAKDAFQEDKLWWSENKQVVKEKSYDLAGQIDRQIAEISLGILNNDKQQAMDGITSLHNLLKTYQDGTYTDNEGNTNITLSSYIAKLTATKKLVDEKEWAKAATQIQDLKTEWLAVEGDVVSQSQAAYDNTERDLMLLDAYINDPA--KQAKTADVLDGMTEELKPFADVTYTWFD-AALIPFREGLEALLIIATL------LTYTKRTKTRTAKRWIIGGTAAGLVVSLALGMIVAFWLSALAFGDNNNLINGWAGLIASIMMLYVSYWLHRNSDITRWNNYMEGKSNQALSNGKMISFAFLAFLAILREGLETVVFLIGMVGRMSNFELLMGILAGLGVLLIIAFVMLRYSVHIPVKPFFMISSAIVFYLCFKFMGSGIHSLQLAGVIPTSVEDYLPSIPALSIYPSWYSFLPQVLLVIFGLTILIKQQIKKKS |
| 4J0G Chain:A ((268-441)) | -------------------------------------------------------------------------------------------------------------TYLNQLKLTASDGTH--------LTLNE--AGMGSFRDVVRQLLISSAQTAF-DQGTDIHKYAGFVVTGNQV----TDLDL---SAYLKSLTRMKAVPAFDQLDLTSPENNLFGDATAKAKHFTALAQTRSTVTAQLADAELIQAINPLSYLTTTSSQVAKHWRIRHGAADRDTSFAIPIILAIMLENHGYG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J0G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -27538 for 1032 contacts (-26.7/contact) +
2D Compatibility (PS) -16966 + (NN) -626 + (LL) 24996
1D Compatibility (HY) -5200 + (ID) 2700
Total energy: -28034.0 ( -27.16 by residue)
QMean score : 0.162
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