Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKRFKKVGIVSAVLVMALSLAACGGGKDTSKSGSSDEKT-LTVSVDAGYK-DYVNKIKGDFEKDNDVKVKVVEKDMFETLEALPLDGPAGTAPDVMMSAFDRIGSLGQQGHLAEVKLGNKDD---YDEKDQKQVTIDDKIYGAPAIIETLVLYYNKDLLDKAPATFKDLETLSKDSRFAFTSEKGKNTGFLAKWTDFYFSYGLLAGYGGYVFGDEGT--NPKDIGLNNKGSVEGITYATKWFQDVWPKGMQDNKSADDFIQDQFVKGKAAAILGGPWSAANYKEA-KINYGVAKIPTLNNGKEYSPFAGGKGWVVSNYSKNKDVAQKWLDYVTNQKNQETLYDMTNEVPANLKARDTAKSKNDELTNAVIEQYKNAQPMPNIPEMSEVWTGAENLMFDAASGSKTPQQSADDAVKVIEDNVTQKYTK |
| 4HW8 Chain:A ((37-407)) | ----------------------------------KDKPNQLTMWVDGDKQMAFYKKITDQYTKKTGIKVKLVNIGQNDQLENISLDAPAGKGPDIFFLAHDNTGSAYLQGLAAEIKL-SKDELKGFNKQALKAMNYDNKQLALPAIVETTALFYNKKLVKNAPQTLEEVEA----NAAKLTDSKKKQYGMLFDAKNFYFNYPFLFGNDDYIFKKNGSEYDIHQLGLNSKHVVKNAERLQKWYD----KGYLPKAATHDVMIGLFKEGKVGQFVTGPWNINEYQETFGKDLGVTTLPT-DGGKPMKPFLGVRGWYLSEYSKHKYWAKDLMLYIT---SKDTLQKYTDEM-SEITGRVDVKSSNPNLK-VFEKQARHAEPMPNIPEMRQVWEPMGNASIFISNG-KNPKQALDEATNDITQNI------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4HW8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -47419 for 3072 contacts (-15.4/contact) +
2D Compatibility (PS) -39454 + (NN) -16931 + (LL) 2648
1D Compatibility (HY) -24400 + (ID) 6550
Total energy: -132106.0 ( -43.00 by residue)
QMean score : 0.434
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