Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MSFIIRKGKILALLIAFLVINQLVPILAVWLLKNHYQTPFTSILLIGLELLIIALFLYYAKVKQIIRWKALL--TRKALVTIFLG---WLSLRVPQIIGYLIMTMQGVKDTANQTVIMELTKQLPLALMLIFTIIGAPIMEEIIFRYIIPKELFAKHQKWGFVIGTLAFALIHSPS-DIGSFIIYAGMGAILSFVYYKTEHLEYSIMVH-FI-NNALAYSVLISTMMNN
4CUA Chain:A ((4-181))
QGANISDQWTGSELPLAFA--SDSNPSDPVSNVNDKLISYNN---------------------QPANRWTNWNRSNPEASVGVLFGDSGILSKRSVDNLSVGFHEDHGVGAPKSYVIEYYVGKTVP----------TAPKNPSFVGNE---DHVFNDSANWKPVTNLKAPAQLKAGEMN--------------HFSFDKVET--YAIRIRMVKADNKRGTSITEVQIFAK
General information:
TITO was launched using:
RESULT:
Template:
4CUA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161500 for 1351 contacts (-119.5/contact) +
2D Compatibility (PS) -17509 + (NN) 4966 + (LL) 6600
1D Compatibility (HY) 1200 + (ID) 1600
Total energy: -167843.0 ( -124.24 by residue)
QMean score : 0.100
(partial model without unconserved sides chains):
PDB file :
Tito_4CUA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CUA-query.scw
PDB file :
Tito_Scwrl_4CUA.pdb
: