Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDVRLINGIALAFEGDAVYSLYIRRHLIMQGFTKPNQLHRKATQYVSANAQALLINAMLEENILTDEEQLIYKRG----RNANSHTKAKNADIITYRMST-------GFEALMGYLDMTGQIKRLETLIQWCIETIEK
4OFZ Chain:A ((91-183))
-----------------------------------------KNLMYKMQETRRAIVFALLNEKDLTKDDVEILKRAYEKLTDN----FQREMCTLTTKLSVNIGDETRGLEKDLKYLDALMNIRREEPNLLWPIIMSRV
General information:
TITO was launched using:
RESULT:
Template:
4OFZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3847 for 384 contacts (-10.0/contact) +
2D Compatibility (PS) -7980 + (NN) -1563 + (LL) 3520
1D Compatibility (HY) -2800 + (ID) 1100
Total energy: -13770.0 ( -35.86 by residue)
QMean score : 0.234
(partial model without unconserved sides chains):
PDB file :
Tito_4OFZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OFZ-query.scw
PDB file :
Tito_Scwrl_4OFZ.pdb
: