Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIFKALLKMEFLLTKRQLANLIMAIGMPVAFFLFFSGFMGEGLTKAIEAIYVRNYMITMAGFSSLSFAFFTFPFSMKDDQLSNRMQLLRHSPVPMWQYYLAKIIRILFYYCLAITVVFLTGHILRQVSMPIEQWMQSFLLLLGGATCFIPFGLLVSYFKNTELMSMVANICYMSLAVLGGMWMPITMFPKWLQALSKLTPTYHLTQVILSPFANSFAGFSLIILIGYGIIMLVIAYLLSQKRHSI
4MGX Chain:A ((1-185))
--------------------QKVRAWGPGLE-----TGQVGKSADFVVEAIGTLGFSIEGPSQAK-----------IECDDKGDGSCDVRYWPTEPGEYAVHVICD-----DEDIRDSPFIAHILPAPPDCFPDKVKAFGPGLEPTGCIVDKP--AEFTIDARAAGKGDLKLYAQDA--DGCPIDIKVIPNG-------DGTFRCSYVPTKPI-------KHTIIISWGGVNV------PKSPFRV
General information:
TITO was launched using:
RESULT:
Template:
4MGX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160829 for 1418 contacts (-113.4/contact) +
2D Compatibility (PS) -18751 + (NN) 5528 + (LL) 7760
1D Compatibility (HY) 800 + (ID) 1550
Total energy: -167042.0 ( -117.80 by residue)
QMean score : -0.042
(partial model without unconserved sides chains):
PDB file :
Tito_4MGX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MGX-query.scw
PDB file :
Tito_Scwrl_4MGX.pdb
: