Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MADISIISMILVVIVAFFAGLEGILDQFQIHQPLVACTLIGLVTGHLEAGIILGGSLQMIALAWANIGAAVAPDAALASVAAAIILVKSGDFTQKGINFAFSTAVPLA-----IAGLFLTM-IVRTISTALVHAGDKAASEG------NFAAIERFHFIALLLQGLRIAFPAALLLAIPSSSVQSILEAMPDWLNGGMQVGGAMVVAVGYAMVINMMATREVWPFFALGFALAALNQLTLIAMGTIGVAIALIYISLSKMGGSKGTSNAGSNDPIGDILEDY |
1UMC Chain:A ((135-193)) | ----------------------------------------------------------------------------------------------KALNF-FTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWEEDVREE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1UMC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -10373 for 188 contacts (-55.2/contact) +
2D Compatibility (PS) -4629 + (NN) -1797 + (LL) 9224
1D Compatibility (HY) -2800 + (ID) 1150
Total energy: -11525.0 ( -61.30 by residue)
QMean score : -0.162
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