Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSQKNNRLGYFGRQKQAFDDYVFLTKAK-----MKAERDYFASEGESDPERLAAQKARDQEFLKSLKKVGIGFIAFLLFYAIVRTVLGLW |
1GMJ Chain:A ((20-79)) | --------GAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQSEDD------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GMJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 8867 for 200 contacts (44.3/contact) +
2D Compatibility (PS) -6147 + (NN) -2812 + (LL) 2604
1D Compatibility (HY) 0 + (ID) 850
Total energy: 1662.0 ( 8.31 by residue)
QMean score : 0.428
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