Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVYHFQNPSDFMLKNYLTKAKTIAVVGLSDRQETAAYQVSKIMQEAGYQIIPVNPKNAGQKILGQMTYASLKDVTEHIDIVNIFRRSEYLPDIAREFLEVDADIFWAQLGLESQEAETILKQAGHKQIVMNKCLKVECQKLHSETN
3Q9U Chain:A ((9-141))
--------TDEGIRETLTRYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPNY--EEVLGRKCYPSVLDIPDKIEVVDLFVNPAKAWRFVAYAIKKGAKVVWFQYNTYYPLAARQA---GL-IIVANRCMMREHKRLLGE--
General information:
TITO was launched using:
RESULT:
Template:
3Q9U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100419 for 1014 contacts (-99.0/contact) +
2D Compatibility (PS) -14295 + (NN) -6116 + (LL) 904
1D Compatibility (HY) -6800 + (ID) 2000
Total energy: -128726.0 ( -126.95 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_3Q9U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q9U-query.scw
PDB file :
Tito_Scwrl_3Q9U.pdb
: