Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKTYRVKSDKDFQMIFSRGKNVANRKFVIYYLEKEQKHFRVGISVSKKLGNAVVRNA-----IKRKIRHVLLSQKTALQDYDFVVIARKGVEELNYQALEKNLIHVLKIAGLI
5C3L Chain:C ((20-93))
-------------------LENLINKWSL--ELEDQEKHFLQQATQVNAWDRTLMQNGERITTLHREMEKVKLDQKRLDQELDFILSQQKELEDLLTPLEESVKEQQHADEERE
General information:
TITO was launched using:
RESULT:
Template:
5C3L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2252 for 260 contacts (8.7/contact) +
2D Compatibility (PS) -7260 + (NN) -3725 + (LL) 1884
1D Compatibility (HY) -3600 + (ID) 950
Total energy: -11399.0 ( -43.84 by residue)
QMean score : 0.216
(partial model without unconserved sides chains):
PDB file :
Tito_5C3L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5C3L-query.scw
PDB file :
Tito_Scwrl_5C3L.pdb
: