Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKLGCLGVLMSIPFFIVVIVTIIFSSSQGDCQVTPDLSTQFVTSSDSASQTDWTKKGSI-ANVTAGKVFHAWVSKGLSGASAAGIVGWVNSEGGFGKYS--W---NYRYVTTAELKNEG-----YTFYNPAKLGYQIMKSVGTVGK
2GBI Chain:A ((112-209))
---------------------------------------NTQWITWSQEGHKLAYVWKNDIYVKIEPHLPSHRITSTGKENVIFNGINDWVYEEEIFGAYSALWWSPNGTFLAYAQFNDTGVPLIEYSFYSDESLQYPKTVWIPYPKA
General information:
TITO was launched using:
RESULT:
Template:
2GBI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 7499 for 488 contacts (15.4/contact) +
2D Compatibility (PS) -9668 + (NN) -3511 + (LL) 3084
1D Compatibility (HY) -5600 + (ID) 1350
Total energy: -9546.0 ( -19.56 by residue)
QMean score : 0.032
(partial model without unconserved sides chains):
PDB file :
Tito_2GBI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GBI-query.scw
PDB file :
Tito_Scwrl_2GBI.pdb
: