Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKRKQFIKLGIATLLTVISLYTPINLATNHTTENIVTAQEYKTKENGTLPFKHKRQLVLGELDDKGRATFAHIQLKVKDEPKKKRVKRLKTTPVGWHNFKFYYNDGTQKAWLMSRGRLICHQFSGLNNERKNLVPMTNWLNTGNYNSTNSSNPESMLFYEKQLKTWLSTHKNYYLDYKVTPIYQNNELIPRKIELKYVGIDKTGKLLPIFIGNKSTQDQFGISTV----TLENTSPNATIDYLSGKAQNT-VLSAKEQRKLIAKHEEEKRLAEKKVEEEKAAAETQKKLEEEQARLAAEAQRKQKEEQARLAAETQKKQETLVQEQTSQGYKRD-YRGRWHRPNGQYASKAEIAAAGLQW |
| 4NA2 Chain:A ((411-564)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------NPYLQLTDSPFY----IVQEKQEWKSV-TDRDGNELPRRAGISS----FGIGGVNAHIVIEEYMP----------QPNVIVLSAKNKSRLIDRASQLLEVIRNK-----------KYTDQDLHRIAYTLQVGREEMDERLACVAGTMQELEEKLQAFVDGK--FFRGQSHRNKETQTIFTADEDMALAL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4NA2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 39691 for 672 contacts (59.1/contact) +
2D Compatibility (PS) -14092 + (NN) -5296 + (LL) 12652
1D Compatibility (HY) -3200 + (ID) 2300
Total energy: 27455.0 ( 40.86 by residue)
QMean score : 0.200
|
|
|