Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIKLVATDMDGTFLDENGTYDKKRLANVLKKFKEQGIVFTAASGRSLLS---LEQLFADFRDQMAFIAENGSAAVLFNR-LAYEQHLSREQYLDIIDHLSK-----SPYMENNEYVLSGKDGAYILSDANPDYIEFITHYYDNLQK-VSHFEDVDDIIFKVTANFTEETVRQAEEWVNQAIPYTTAVTTGFKS-IDIILSSVNKRNGLEHLCEQYGIRAEEVLSFGDNINDLEMLEWSGKAIATENARPEVKEIADCIIGHHNNQAVMAYLESMVD |
| 1NF2 Chain:A ((1-261)) | MYRVFVFDLDGTLLNDNLEISEKDRRNIEKLSRKCYVVF--ASGRMLVSTLNVEKKY--FKRTFPTIAYNGAIVYLPEEGVILNEKIPPEVAKDIIEYIKPLNVHWQAYIDDVLY--SEKDNEEIKSYARHSNVDYRVE--PNLSELVSKMGTTKLLLID-----TPERLDELKEILSERFKDVVKVFKSFPTYLEIVPKNVDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAGLRVAMENAIEKVKEASDIVTLTNNDSGVSYVLERIST |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NF2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -90443 for 2036 contacts (-44.4/contact) +
2D Compatibility (PS) -26951 + (NN) -8769 + (LL) 1256
1D Compatibility (HY) -18400 + (ID) 3800
Total energy: -147107.0 ( -72.25 by residue)
QMean score : 0.389
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