Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSDIKILALDLDGTLFTTD-KKVSEENKVALKAAREKGIKVVITTGRPLKAIGNL--LEDLELVSDEDYSITFNGGLVQQNTGKILAKTAMTRQEVEDIHEELYQVGLPTDILSEGTVYSIANKGHHSQYHLANPLLEFIEVDDLEQVPKDVVYNK-IVSVIDATYLDQQIAKLPDRLKVDYEMFKSRDIILELMPKGVHKAVGLELLTKHLGLDSSQVMAMGDEANDLSMLEWAGLGVAMANGIPEAKAIAKATTICNNDESGVAEAIGKYILSEEN |
| 1YMQ Chain:A ((3-258)) | ----KALFFDIDGTLVSFETHRIPSSTIEALEAAHAKGLKIFIATGRPKAIINNLSELQDRNLI---DGYITMNGAYCFVGE-EVIYKSAIPQEEVKAMAAFCEKKGVPCIFVEEHNI-SVCQPNEM----VKKIFYDFLHVNVIPTVSFEEASNKEVIQMTPFITEEEEKEVLPSIPTC--EIGRWYPAFADVTAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKEDVKAAADYVT-APIDEDGISKAMKHFGII--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YMQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -95635 for 2263 contacts (-42.3/contact) +
2D Compatibility (PS) -27554 + (NN) -9698 + (LL) 1028
1D Compatibility (HY) -14000 + (ID) 3650
Total energy: -149509.0 ( -66.07 by residue)
QMean score : 0.523
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