Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKNKIKKTLVDQILDKAKIEHDSLQLDALQGDLPNGIQKQDIFKTLALIGDKTGPIIGILPLTEHLSEKKLAKISGNKKVQMIPQKDLQKITGYIHGANNPIGIRQKHNYPI--FIDTIALEKQELIVSAGEIGRSIRINSEVLADFVNAKFADIKE
3RI0 Chain:A ((41-156))
-------------------------------------GAEVGQIVKSLAYGGSK-GAYLFLVSGKNRLDLGKAARLVGTDLLEL-DKWAVAALTGFAAGGVPPVG----HNTPLPAYLDEDLLGYPEVWAAGGTPRALFRATPKELLALTGAQVADLKE
General information:
TITO was launched using:
RESULT:
Template:
3RI0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40508 for 847 contacts (-47.8/contact) +
2D Compatibility (PS) -12419 + (NN) -2714 + (LL) 3200
1D Compatibility (HY) -6000 + (ID) 1550
Total energy: -59991.0 ( -70.83 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_3RI0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RI0-query.scw
PDB file :
Tito_Scwrl_3RI0.pdb
: