Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNTNDFDFYLPEELIAQTPLEKRDASKLLVIDHKNKTMTDSHFDHILDELKPGDALVMNNTRVLPARLYGEKPDTHGHIELLLLKNTEGDQWEVLAKPAKRLRVGTKVSFGDGRLIATVTKELEHGGRIVEFSY--DGIFLEVLESLGEMPLPPYIHEKLEDRDRYQTVYAKENGSAAAPTAGLHFTKELLEKIETKGVKLVYLTLHVGLGTFRPVSVDNLDEHEMHSEFYQLSKEAADTLNAVKESGGRIVAVGTTSIRTLETIGSKFNGELKADSGWTNIFIKPGYQFKVVDAFSTNFHLPKSTLVMLVSAFAGRDFVLEAYNHAVEERYRFFSFGDAMFVK |
1VKY Chain:B ((16-346)) | ---SEFDYELPPELIAQEPVEPRDASRLMVLHRKTQRIEHRIFREIIEYLEPGDLLVLNVSKVIPARLYARK---GASIEILLIERLEEGIWKCLVRPGQKVKKGTELVI-DEDLSAVCLGRGEDGTRILKFQPQDDRLIFEK----G--------------------------------TAGLHFTPELIEKLKKKGVQFAEVVLHVGI----------------HEEFYQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIAR--LPEQEEYVGKTDLFIYPPFEFKLVDALVTNFHLPRSTLLMLVAAFAGKDFVMEAYREAVKRRYRFFSFGDAMLIL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VKY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -188842 for 2216 contacts (-85.2/contact) +
2D Compatibility (PS) -29813 + (NN) -5365 + (LL) 2976
1D Compatibility (HY) -31600 + (ID) 7150
Total energy: -259794.0 ( -117.24 by residue)
QMean score : 0.556
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