Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLDKLLGQAGFGSRNQVKKLIRSRQVSVDG-------QIVTKDNVIVDSGLQSIFVGKERVCLKESSYYLLYKPSGVVSAVRDSEHKTVIDLISEKDRVEGLYPIGRLDRDTEGLLIITNNGPLGYRMLHPKHHVAKTYYVEVNGFLERDAITFFEEGVVFDDGTKCKPAELTIDTANNDKSTARITITEGKFHQVKKMFLAYGVKVIYLRRISFGDLRLDMNLKPGQYRRLRDSEAAILKRYLD
3DH3 Chain:A ((7-228))
VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDLVLIA------LNKPVGIVSTTEDGERDNIVDFVNHSKRV---FPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-----LGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFKLIE
General information:
TITO was launched using:
RESULT:
Template:
3DH3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87447 for 1554 contacts (-56.3/contact) +
2D Compatibility (PS) -23436 + (NN) -11179 + (LL) 516
1D Compatibility (HY) -16400 + (ID) 3150
Total energy: -141096.0 ( -90.80 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_3DH3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DH3-query.scw
PDB file :
Tito_Scwrl_3DH3.pdb
: