Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNHKTKKLTVLAIMIALDVFLTPIFR--IE--GMAFMSSVVNIIAGVIMGPIYALVMALVTAFIRILTQAGVASVAPLAILGAGPGAFLAGWLYQFYAKDWMSWVGEFIGTGIIGALLSAPIMVWFWTWTADGNHEVLAKASAAQSIFLFMPRFIGATIIGGVIALLLLQGLKRVPVFMTIQALFKGEKVK
2KSF Chain:A ((399-462))
-----IQGSVVAAALSAVITLIAMQWLMAFDAANLVMLYLLGVVVVALFYGRWPSVVATVINVVSFDLF---------------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2KSF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55279 for 338 contacts (-163.5/contact) +
2D Compatibility (PS) -6161 + (NN) -2564 + (LL) 10604
1D Compatibility (HY) -4800 + (ID) 300
Total energy: -58500.0 ( -173.08 by residue)
QMean score : 0.115
(partial model without unconserved sides chains):
PDB file :
Tito_2KSF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KSF-query.scw
PDB file :
Tito_Scwrl_2KSF.pdb
: