Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDAKFDFAKLLVYKAGQFIKSEMQNTFDVEEKSRFDDLVTSLDKKTQKLLIQEIIQHYPDDNILAEE-DDVRSPIAQGNVWVLDPIDGTVNFIVQKDNFAVMLAYYEEGVGQFGIIYDVMADILYSGGGHFDVYANDKKIVPFQECPLERCLL---------GVNSAMYAENDCGIAHLASETLGVRIYGGAGISMAKVMQGKLLAYFSY-IQPWDYAAAKIMGETLGFTLLTLDGEEPNY--------STRQKVMFLPKSKLNLIQSYLTKK
2CZI Chain:A ((31-287))
----FQAAVQLALRAGQIIRKALTEE----TKTSAADLVTETDHLVEDLIISELRERFPSHRFIAEEA---KCVLTHSPTWIIDPIDGTCNFVHRFPTVAVSIGFAVRQELEFGVIYHCTEERLYTGRRGRGAFCNGQRLRVSGETDLSKALVLTEIGPKRDPATLKLFLSNMERLLH--AKAHGVRVIGSSTLALCHLASGAADAYYQFGLHCWDLAAATVIIREAGGIVIDTSGGPLDLMACRVVAASTREMAMLIAQALQTINY------
General information:
TITO was launched using:
RESULT:
Template:
2CZI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160883 for 1878 contacts (-85.7/contact) +
2D Compatibility (PS) -24895 + (NN) -13310 + (LL) 1712
1D Compatibility (HY) -13200 + (ID) 3100
Total energy: -213676.0 ( -113.78 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_2CZI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CZI-query.scw
PDB file :
Tito_Scwrl_2CZI.pdb
: