Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MISSNYSYPLDPSWNTEDITKVLRFLNQVEHAYENSVKVDDLLDSYKEFKKVVKSKAQEKQIDREFQRTSGYSTYQAVKAAQQQAKGFISLGR
1TVF Chain:A ((49-84))
-----YQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQVWTIADLLQITVSNSSNAAALILAKK
General information:
TITO was launched using:
RESULT:
Template:
1TVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 430 for 135 contacts (3.2/contact) +
2D Compatibility (PS) -3835 + (NN) -2877 + (LL) 276
1D Compatibility (HY) -4400 + (ID) 500
Total energy: -10906.0 ( -80.79 by residue)
QMean score : 0.419
(partial model without unconserved sides chains):
PDB file :
Tito_1TVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TVF-query.scw
PDB file :
Tito_Scwrl_1TVF.pdb
: