Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLFQEKIAYNCAKKEALYKESLGRYALRSMLAGAYLTMSTAAGIVAADTIGKI-----SPALSGFVFAFIFSFGLIYVLIFNGELATSNMLYLTAGAYNKNISWKKAITILIYCTFFNLVGACILAWLFNQSYSFQHLTNDSFLGHVVAKKLGKPSSGAFLEGIIANMFVNLAILAYMLLKEESAKMTVILSAIFMFVFLSNEHLIANFASFMLAAFSHIEHIKGFTLLNVIRQWTLVFFGNWIGGGVFIGLAYAWLNKTKTSHHE
3TDS Chain:E ((10-259))
-----DKLTNAAINKINLLNTSKVKYLVSSAFAGLYVGI----GILLIFTIGGLLTDAGSP-MTKIVMGLSFAIALSLVIMTGTELFTGNNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTGLVDKGPVAEFFANTAASKASMPFTALFFRGILCNILVCVSVLCSFRTNSDTAKIIMIFLCLFAIITSGFEHSVANMTIYSVSLFS--PTISTVTIGGAIYNLVAVTLGNIVGGALFMGLGTYILGKEK-----
General information:
TITO was launched using:
RESULT:
Template:
3TDS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -233667 for 2216 contacts (-105.4/contact) +
2D Compatibility (PS) -26099 + (NN) -14000 + (LL) 1528
1D Compatibility (HY) -22400 + (ID) 3600
Total energy: -298238.0 ( -134.58 by residue)
QMean score : 0.326
(partial model without unconserved sides chains):
PDB file :
Tito_3TDS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TDS-query.scw
PDB file :
Tito_Scwrl_3TDS.pdb
: