Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPQTLRRLDVKKQFIEKIEPFAHRQTLKSKAVNSSKTTMSIQRYNHSGTKIQLRIGY-SKVLIRIFSNGKINLTHYDLFFDREETLEITDAFDNGVYTQDEVDGFIKQAKTFIKQALKGEV
2JU3 Chain:A ((13-67))
----------------ENFEPFMKAMGLPEDLIQKGKDIKGVSEIVHEGKKVKLTITYGSKVIHNEFTLGEECELETMTGEKVKAVVKMEGDNKMVTTFKGIKSVTEFNGDTITNTMTLGDI
General information:
TITO was launched using:
RESULT:
Template:
2JU3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3919 for 279 contacts (-14.0/contact) +
2D Compatibility (PS) -5874 + (NN) -3841 + (LL) 1544
1D Compatibility (HY) -4000 + (ID) 850
Total energy: -16940.0 ( -60.72 by residue)
QMean score : 0.306
(partial model without unconserved sides chains):
PDB file :
Tito_2JU3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JU3-query.scw
PDB file :
Tito_Scwrl_2JU3.pdb
: