Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRRVYSFLGGIILVILILFGLTTYLEKKSSSTPNSDKLVIYNWGDYIDPALLKKFTKETGIEVQYETFDSNEAMHTKIKQGGTTYDIAVPSDYMIDKMIKENLLVKLDHSKIANWDAIGARFKNL--SFDPKNKYSIPYFWGTVGIVYNDQLVK------TPPKHWDDLWRPEFRNK-----IMLVDSAREVIGVGLNSLGYGLNTKNISELKA-ASKKLDALTPNVKAIVADEMKGYMIQGDAAIGVTFSG-------EAREMLDGNKHLHYVVPSEGSNLWFDNIVIPKTVKHRKEAYAFINFMMEPKNAAQNAEYIGYATPNLKAKALLPADIKNDKAFYPPDKTIDHLEVYNNLGQKWLGIYNDLYLQFKMYRK |
| 4JDF Chain:A ((7-313)) | -------------------------------------LHIYNWTEYIAPDTVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSAYFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDDPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGSVWQASNRAKEAKNG-VNVSFSIPKEGAMAWFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATPLVSAEVRENPGIYPPADVRAKLFTQKVQDPKIDRVRTRAWTKVKSG-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JDF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -133124 for 2257 contacts (-59.0/contact) +
2D Compatibility (PS) -30939 + (NN) -18273 + (LL) 2520
1D Compatibility (HY) -20800 + (ID) 4900
Total energy: -205516.0 ( -91.06 by residue)
QMean score : 0.541
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