Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNKRILNSQFAVYKNWPSWLLL------------LFACFMVYLFFFVGLTLGGVGIVLVSSVLY-------------KFSSYTFFEFINLFNNIYGELGTFSFSAFLLLIWVKFVEKRPFSELGFSTKFKRTLWSLIKGWSIGFILFSISVITAYILGGLDFHSYDVSKATIFYVVTLLPFWL----IQSGTEELLTRGWLLPLINHRFHLAVAIGVSSTLFGILHLVN-----AHVTFLSIVSI--------ICSGVLMSLYMIKSGNIWSVAALHGAWNFSQGNLYGIAVSGQKAGASLLHFTVKENAPDWISGGAFGIEGSLISIF--VLLAAIIYLLWLIKTEETD |
| 4TXD Chain:A ((21-369)) | --KRDVLAELGLGDLRPYLRSIGDKDRIFPKAHRIEVVFLVRAANYLLLRTEGAGTINMTTLEYSGGAMEVPVIQPQKLMAVTRRQMLQLLREYRDSLDEVSKRWLVQEVIGKAKD------LGFKKVSEE--WNCTIQGMDGFC--PHCTIFGAALTEQHNEKFGGLSIGIKTRVRFDPAFATQRRITPETHNKVTEGH-LSMTGQALFSEVHVEPGTVFIGRAELVDLTEPELVATLYSLATLRELGGRSGIYGTVRVEILGVKAGKYASTTAYDLAAENA-GKGYEEVKKNLKERLEKLGFTPVDNSKLLAAVDHKDPNGLFKDLWRSSIDFAEKMVKWVEELKGGG |
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General information:
TITO was launched using:
| RESULT:
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Template: 4TXD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -313893 for 2201 contacts (-142.6/contact) +
2D Compatibility (PS) -30680 + (NN) -3825 + (LL) 1192
1D Compatibility (HY) -3200 + (ID) 2700
Total energy: -353106.0 ( -160.43 by residue)
QMean score : 0.178
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