Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYKIIASLFLVLIPIFSQVLVKIFKLK-KFNIMFPDVAF-PIFVFLIPLISSSLLKQNLLPYYLILISLLAIGITIKLLRTKTLFSYKRFLKLFWRSGFILTFLFYLGLLVIIFIKVQ
1GH5 Chain:A ((1-87))
MINRTDCN---------ENSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESG--------NNVVTLQFQR-NLSDPRLETITLQKW-----GSWNPG---------HIHEILSIRIY
General information:
TITO was launched using:
RESULT:
Template:
1GH5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114204 for 584 contacts (-195.6/contact) +
2D Compatibility (PS) -9076 + (NN) 5037 + (LL) 3932
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -117011.0 ( -200.36 by residue)
QMean score : 0.065
(partial model without unconserved sides chains):
PDB file :
Tito_1GH5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GH5-query.scw
PDB file :
Tito_Scwrl_1GH5.pdb
: