Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIEITWTVKYITEFIATAFLIILGNGA------VANVDLKGTKGNNS--------GWIIIAIGYGLGVMMPALMFGNVSGNHINPAFTLGLAFSGLFPWAHVGQYILAQILGAMFGQLVVVMVYQPYFVKTENPNHVLGSFSTISALDDGQKSSRKAAYINGFLNEFVGSFVLFFGALALTKNYFGVELVGKLVQAGYDQTTAATRISPYVTGSLAVAHLGIGFLVMTLVASLGGPTGPALNPARDLGPRIVHRLLPKQILGQAKEDSKWWYAWVPVLAPIVASILAVALFKLLYL |
| 3NE2 Chain:A ((2-243)) | --TMTLAKRFTAEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAATVGG----LGATAPFPGIGYGQA----------ILTEAIGTFLLML----------------VIMGVAVDE-----RAPP------GFAGLVIGLTVGGIITTIGNITGSSLNPARTFGPYLGDSLMGINL---------WQYFPIYVIGPIVGAVAAAWLYNYLAK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NE2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -156252 for 2027 contacts (-77.1/contact) +
2D Compatibility (PS) -23709 + (NN) -7912 + (LL) 3068
1D Compatibility (HY) -21200 + (ID) 3700
Total energy: -209705.0 ( -103.46 by residue)
QMean score : 0.320
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