Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSSYWNNYPELKKNIDETNQLIQERIQVRNKDIEAALS----QLTAAGGKQLRPAFFYLFSQLGNKENQDTQQLKKIAASLEILHVATLIHDDVIDDSPLRRGNMTIQSKFGKDIAVYTGDLLFTVFFDLILESMADTPFMRINAKSMRKILMGELDQMHLRYNQQQGIHHYLRAISGKTAELFKLASKEGAYFGGAEKEVVRLAGHIGFNIGMTFQILDDILDYTADKKTFNKPVLEDLTQGVYSLPLLLAIEENPDIFKPILDKKTDMATED--MEKIAYLVVSHRGVDKARHLARKFTEKAISDINKLPQNSAKKQLLQLTNYLLKRKI |
| 3Q2Q Chain:A ((34-350)) | --------PELTARINDAMVQVEELLHTELSSGEDFLVDIVMHLTRAGGKRFRPMFALLASEFGEKPL--SENVIKAAVVVEITHLATLYHDDVMDEA-------SANARWDNSVAILAGDILLAHASGLMSQLGTDT--VAHFAETFGELVTGQMRET-VGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETH----TPGTDLREGVFTLPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDSTVKEALRNLATFTVKRVG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3Q2Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -103691 for 2361 contacts (-43.9/contact) +
2D Compatibility (PS) -32294 + (NN) -18868 + (LL) 772
1D Compatibility (HY) -14400 + (ID) 4400
Total energy: -172881.0 ( -73.22 by residue)
QMean score : 0.518
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