Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDAFADVAKMKKIKEDIKSHEGQMVELTLENGRKREKNKIGRLIE--VYPSLFIVEYKDTAAVPGAIDNTYVESYTYSDILTEKTLIRYFDDESAE
3JB9 Chain:I ((4-48))
---------VPVNPKPFLQGLIGKPVLVRLKWGQ----EYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEILIRCNNVLWVGEV-----------
General information:
TITO was launched using:
RESULT:
Template:
3JB9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5569 for 189 contacts (-29.5/contact) +
2D Compatibility (PS) -4619 + (NN) 652 + (LL) 1596
1D Compatibility (HY) -400 + (ID) 450
Total energy: -8790.0 ( -46.51 by residue)
QMean score : 0.287
(partial model without unconserved sides chains):
PDB file :
Tito_3JB9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JB9-query.scw
PDB file :
Tito_Scwrl_3JB9.pdb
: