Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTMLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPDEQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVKAQS
1FFV Chain:A ((6-152))
--ITVNVNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDIDGRSVKSCTHLAVQCDGSEVLTVEGLAN-KGVLHAVQEGFYKEHGLQCGFCTPGMLMRAYRFLQENPNPTEAEIRMGMTGNLCRCTGYQNIVKAVQYAA---------
General information:
TITO was launched using:
RESULT:
Template:
1FFV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147192 for 1215 contacts (-121.1/contact) +
2D Compatibility (PS) -15887 + (NN) -4403 + (LL) 1040
1D Compatibility (HY) -16000 + (ID) 4150
Total energy: -186592.0 ( -153.57 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_1FFV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FFV-query.scw
PDB file :
Tito_Scwrl_1FFV.pdb
: