Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTVTLCSPTEDDWPGMFLLAAASFTDFIGPESATAWRTLVPTDGAVVVRDGAGPGSEVVGMALYMDLRLTVPGEVVLPTAGLSFVAVAPTHRRRGLLRAMCAELHRRIADSGYPVAALHASEGGIYGRFGYGPATTLHELTVDRRFARFHADAPGGGLGGSSVRLVRPTEHRGEFEAIYERWRQQVPGGLLRPQVLWDELLAECKAAPGGDRESFALLHPDGYALYRVDR--TDLKLARVSELRAVTADAHCALWRALIGLDSMERISIITHPQDPLPHLLTDTRLARTTWRQDGLWLRIMNVPAALEARGYAHEVGEFSTVLEV-----SDGGRFALKIGDGRARCTPTDAAAEIEMDRDVLGSLYLGAHRASTLAAANRLRTKDSQLLRRLDAAFASDVPVQTAFEF |
3SXN Chain:A ((26-422)) | ---TLHTITDDDWTRIALLARFAFGDIEPEQTQAAWRSMVPEDATVVVPDETD--DAFVGQSLYLDMQLTVPGGEVLPVAGISFVAVAPTHRRRGVLRAMYTELHDRIARAGYPLAVLTASEGGIYGRFGYGVATIEQHVSVDRRLAQFHPAAPDPG----GVRMLVPADHRDGLADIYDRWRRRTPGGLVRPDALWDDLLADRPESRRGGGELFAFGHQDGYALYRVDRGPDGRRSAHVVELTAVTADAHAALWRALLGLDLIDRVSIGTHPHDPLPYLLTDPRQAQVTASADDLWIRIMNVPAALEARRYQ---ADLDVVLDVADGFRSDGGRFALQISGGRARCTTTDAPADIEIDLDVLGGLYLGAHRVDGFAAANRLRSKDSELLQQFGAAFAGDMPAELGYGF |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3SXN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -284780 for 3270 contacts (-87.1/contact) +
2D Compatibility (PS) -42696 + (NN) -19368 + (LL) 284
1D Compatibility (HY) -36800 + (ID) 11700
Total energy: -395060.0 ( -120.81 by residue)
QMean score : 0.466
|
|
|