Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDRKPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQVMLVTPQLRAAAQAVRGGA
3D3B Chain:A ((49-131))
-----------------------------------------------------YFRELLAGVATNTAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK-------------------
General information:
TITO was launched using:
RESULT:
Template:
3D3B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42188 for 553 contacts (-76.3/contact) +
2D Compatibility (PS) -8598 + (NN) -2089 + (LL) 6580
1D Compatibility (HY) -9200 + (ID) 1600
Total energy: -57095.0 ( -103.25 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_3D3B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D3B-query.scw
PDB file :
Tito_Scwrl_3D3B.pdb
: