Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MMQQAVSGITGALGGAVGGVMGPLTQLPQQAMQAGQGAMQPLMSALQQTYGAEGLDVA-----------DGARLVDSIEGEPGLGGEPGAGDVGAGGGGGGTTPTGYLGPPPVPTSSPPTTPAGAPAKSVTPDPVSGTPRASGPAGMTGMPMVPPGALGAGAEGANKDKPVEKRVTGCAEWSTGQGPLNSTAECSGEICRRQAGGHQVDATDPCCAERRQG |
4P98 Chain:A ((146-224)) | --------------GAVGGPQLPFVLATHKGIRAGLKAANP-RASYEETYTGRFYDLQKEQEAARGLLDKGAQLLVATDDGRGLGQAAVAGDV-------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4P98.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 11809 for 394 contacts (30.0/contact) +
2D Compatibility (PS) -7020 + (NN) 1853 + (LL) 1620
1D Compatibility (HY) -2000 + (ID) 1150
Total energy: 5112.0 ( 12.97 by residue)
QMean score : -0.046
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