Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDERFRGSVSHAYQAFHGELLRFLRKHLGSSADA---------ADLAQDTFAQWLKWPGRQSV---------EQPRAFLFQIARNLLRDHWRRQQSRGQDLDRPAANDEPAALEGEAAGPGERFEQQQRLSHLAAALAELPPRRREAFVLHKFDGLSQVEVAERMGISLSMVEKHIASALLHCKRRLGQGGEG |
2VKZ Chain:A ((183-281)) | ----------------QNEILGDLGKEFGTTPEKPEETPLEELAETFQDTFSGAL---GKQSSSLLSRLISSKMPGGFTITVARKYLQTRWGLPSGRQDGVLLVALSNEPAARLGSEADAKAFLDSMAQKYASIVGVDLLEEITKDHKVLARQQLQVLARYLKMDLDNGERKFLKEKDTVAELQAQLDYLNAE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VKZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 8967 for 405 contacts (22.1/contact) +
2D Compatibility (PS) -8555 + (NN) -3114 + (LL) 1288
1D Compatibility (HY) -2800 + (ID) 1400
Total energy: -5614.0 ( -13.86 by residue)
QMean score : 0.265
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