Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSACQSPIIVALDFPTREAALALADQLDPKLCRVKVGKELFTSCAAGIVETLRGKGFEVFLDLKFHDIPNTTAMAVKAAAEMGVWMVNVHCSGGLRMMAACRETLEAFSGP---RPLLIGVTVLTSM-EREDLAGIGLDIEPQEQVLRLAALAQKAGMDGLVCSAQEAPALKA-AHPGLQLVTPGIRPAGSAQDDQRRILTPRQALDAGSDYLVIGRPISQAADPAKALAAIVAELG
2YYU Chain:A ((5-236))
-----TPFIVALDFPSKQEVERFLRPFAGTPLFVKVGMELYYQEGPAIVAFLKEQGHAVFLDLKLHDIPNTVKQAMKGLARVGADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMRPRCIAVTQLTSTDERMLHEELWISRPLVETVAHYAALAKESGLDGVVCSANEAAFIKERCGASFLAVTPGIRFAD-------RVVTPRKARALGSDYIVIGRSLTRAADPLRTYARLQHEWN
General information:
TITO was launched using:
RESULT:
Template:
2YYU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -167715 for 1830 contacts (-91.6/contact) +
2D Compatibility (PS) -25254 + (NN) -20791 + (LL) 804
1D Compatibility (HY) -14400 + (ID) 4950
Total energy: -232306.0 ( -126.94 by residue)
QMean score : 0.672
(partial model without unconserved sides chains):
PDB file :
Tito_2YYU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YYU-query.scw
PDB file :
Tito_Scwrl_2YYU.pdb
: