Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLRLIAVGSRMPRWVEEGWQEYVKRLPAELSLELVEIPLNTRGKNADVA-RLIRQEGEAMLARV-----------------QPGE----RVVTLEVEGRPWSTEQLARELDRWRLDARTVNLMVGGPEGLAPEVCARSEQRWSLSPLTLPHPLVRILVGEQIYRAWTVLSGHPYHK
3OFT Chain:A ((130-240))
------------PRGSCDFVSDFAEILPLNIFLTLIDVPLEDRPRLRQLGVQLTRPDGSMTVEQLKQAADDYLWPFIEKRMAQPGDDLFSRILSEPVGGRPWTVDE-ARRMCR--------NLLFGGLDTVA---------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3OFT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8246 for 444 contacts (-18.6/contact) +
2D Compatibility (PS) -9388 + (NN) -5639 + (LL) 5596
1D Compatibility (HY) -6400 + (ID) 1450
Total energy: -25527.0 ( -57.49 by residue)
QMean score : 0.277
(partial model without unconserved sides chains):
PDB file :
Tito_3OFT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OFT-query.scw
PDB file :
Tito_Scwrl_3OFT.pdb
: