Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
1YCA Chain:A ((1-153))
-GLSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGNTTLTALGGILKKKGHHEAELTPLAQSHATKHKIPVKYLEFISEAIIQVLQSKHPGDFGADAQGAMSKALELFRNDMAAKYKELGFQG
General information:
TITO was launched using:
RESULT:
Template:
1YCA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68217 for 1126 contacts (-60.6/contact) +
2D Compatibility (PS) -16514 + (NN) -9877 + (LL) 208
1D Compatibility (HY) -17200 + (ID) 7100
Total energy: -118700.0 ( -105.42 by residue)
QMean score : 0.658
(partial model without unconserved sides chains):
PDB file :
Tito_1YCA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YCA-query.scw
PDB file :
Tito_Scwrl_1YCA.pdb
: