Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVECVMNNVTCTRIYEKVE
4A1H Chain:A ((8-133))
--------GTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKSGDIITIRTESTFKNTEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKMKGVVCTRIYEKV-
General information:
TITO was launched using:
RESULT:
Template:
4A1H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35142 for 895 contacts (-39.3/contact) +
2D Compatibility (PS) -14340 + (NN) -3683 + (LL) 1220
1D Compatibility (HY) -12800 + (ID) 3700
Total energy: -68445.0 ( -76.47 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_4A1H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4A1H-query.scw
PDB file :
Tito_Scwrl_4A1H.pdb
: