Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKSCLLL
4DXA Chain:A ((3-169))
MREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR-----------------
General information:
TITO was launched using:
RESULT:
Template:
4DXA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107314 for 1352 contacts (-79.4/contact) +
2D Compatibility (PS) -17959 + (NN) -4230 + (LL) 1072
1D Compatibility (HY) -24000 + (ID) 8150
Total energy: -160581.0 ( -118.77 by residue)
QMean score : 0.701
(partial model without unconserved sides chains):
PDB file :
Tito_4DXA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DXA-query.scw
PDB file :
Tito_Scwrl_4DXA.pdb
: