Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VRSLNSIVAVCQNMGIGKDGNLPWPPLRNEYKYFQRMTSTSHVEGKQNAVIMGKKTWFSIPEKNRPLKDRINIVLSRELKEAPKGAHYLSKSLDDALALLDSPELKSKVDMVWIVGGTAVYKAAMEKPINHRLFVTRILHEFESDTFFPEIDYKDFKLLTEYPGVPADIQEEDGIQYKFEVYQKSVLAQ
2DHF Chain:A ((4-185))
---LNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKN----
General information:
TITO was launched using:
RESULT:
Template:
2DHF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112040 for 1342 contacts (-83.5/contact) +
2D Compatibility (PS) -20165 + (NN) -10849 + (LL) 896
1D Compatibility (HY) -23600 + (ID) 6850
Total energy: -172608.0 ( -128.62 by residue)
QMean score : 0.758
(partial model without unconserved sides chains):
PDB file :
Tito_2DHF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DHF-query.scw
PDB file :
Tito_Scwrl_2DHF.pdb
: