Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVRPLNCIVAVSQNMGIGKNGDLPWPLLRNEFKYFQRMTTTSSVEGKQNLVIMGRKTWFSIPEKNRPLKDRINIVLSRELKEPPQGAHFLAKSLDDALKLIEQPELASKVDMVWVVGGSSVYQEAMNQPGHLRLFVTRIMQEFESDTFFPEIDLEKYKLLPEYPGVLSEIQEEKGIKYKFEVYEKKD
4M6K Chain:A ((2-187))
-VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKND
General information:
TITO was launched using:
RESULT:
Template:
4M6K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118869 for 1414 contacts (-84.1/contact) +
2D Compatibility (PS) -19919 + (NN) -8519 + (LL) 208
1D Compatibility (HY) -26000 + (ID) 8350
Total energy: -181449.0 ( -128.32 by residue)
QMean score : 0.690
(partial model without unconserved sides chains):
PDB file :
Tito_4M6K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M6K-query.scw
PDB file :
Tito_Scwrl_4M6K.pdb
: