Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADEIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG
1KPF Chain:A ((15-125))
---------------DTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG
General information:
TITO was launched using:
RESULT:
Template:
1KPF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83642 for 769 contacts (-108.8/contact) +
2D Compatibility (PS) -12075 + (NN) -8930 + (LL) 1008
1D Compatibility (HY) -16000 + (ID) 5550
Total energy: -125189.0 ( -162.79 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_1KPF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KPF-query.scw
PDB file :
Tito_Scwrl_1KPF.pdb
: