Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPLAAVSLGLLLLALLLLLRHLGWGLVTIFWFEYVLQPVHNLIMGDTKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQGPSSPDKS
1VID Chain:A ((4-216))
----------------------------------------------TKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQGPS-----
General information:
TITO was launched using:
RESULT:
Template:
1VID.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140325 for 1804 contacts (-77.8/contact) +
2D Compatibility (PS) -23082 + (NN) -9325 + (LL) 4436
1D Compatibility (HY) -32800 + (ID) 10650
Total energy: -211746.0 ( -117.38 by residue)
QMean score : 0.457
(partial model without unconserved sides chains):
PDB file :
Tito_1VID.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VID-query.scw
PDB file :
Tito_Scwrl_1VID.pdb
: