Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
3HP1 Chain:A ((40-280))
-------------------RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQ---------------GGNVLQMMYEKPERWSFTFQTYACLSMIRAQLASLNGKLKDAEKPVLFFERSVYSARYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
General information:
TITO was launched using:
RESULT:
Template:
3HP1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113069 for 1737 contacts (-65.1/contact) +
2D Compatibility (PS) -23838 + (NN) -6477 + (LL) 1348
1D Compatibility (HY) -35600 + (ID) 11200
Total energy: -188836.0 ( -108.71 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_3HP1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HP1-query.scw
PDB file :
Tito_Scwrl_3HP1.pdb
: