Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTMKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPEAPS
2RF5 Chain:A ((45-247))
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTIKMAHAPPGHHSVIGRP----LAYAEYVIYRGEQAYPEYLITYQIMKPE---
General information:
TITO was launched using:
RESULT:
Template:
2RF5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57254 for 1551 contacts (-36.9/contact) +
2D Compatibility (PS) -21688 + (NN) -9133 + (LL) -112
1D Compatibility (HY) -26400 + (ID) 9900
Total energy: -124487.0 ( -80.26 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_2RF5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RF5-query.scw
PDB file :
Tito_Scwrl_2RF5.pdb
: