Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLPTAQEVQGLMARYIELVDVGDIEAIVQMYADDATVEDPFGQPPIHGREQIAAFYRQGLGGGKVRACLTGPVRASHNGCGAMPFRVEMVWNGQPCALDVIDVMRFDEHGRIQTMQAYWSEVNLSVREPQ
3CPO Chain:A ((3-127))
--LPTAQEVQGLMARYIELVDVGDIEAIVQMYADDATVENPFGQPPIHGREQIAAFYRQGL---KVRACLTGPVRASHNGCGAMPFRVEMVWNGQPCALDVIDVMRFDEHGRIQTMQAYWSEVNLSV----
General information:
TITO was launched using:
RESULT:
Template:
3CPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84378 for 889 contacts (-94.9/contact) +
2D Compatibility (PS) -13540 + (NN) -4462 + (LL) -204
1D Compatibility (HY) -18400 + (ID) 6050
Total energy: -127034.0 ( -142.90 by residue)
QMean score : 0.435
(partial model without unconserved sides chains):
PDB file :
Tito_3CPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CPO-query.scw
PDB file :
Tito_Scwrl_3CPO.pdb
: