Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MANYSHAADNILQNLSPLTAFLKLTSLGFIIGVSVVGNLLISILLVKDKTLHRAPYYFLLDLCCSDILRSAICFPFVFNSVKNGSTWTYGTLTCKVIAFLGVLSCFHTAFMLFCISVTRYLAIAHHRFYTKRLTFWTCLAVICMVWTLSVAMAFPPVLDVGTYSFIREEDQ-----------CTF-QHRSFRANDSLGFMLLLALILLATQLVYLKLIFFVHDRRKMKPVQFVAAVSQNWTFHGPGASGQAAANWLAGFGRGPTPPTLLGIRQNANTTGRRRLLVLDEFKMEKRISRMFYIMTFLFLTLWGPYLVACYWRVFARGPVVPGGFLTAAVWMSFAQAGINPFVCIFSNRELRRCFSTTLLYCRKSRLPREPYCVI |
| 4AMJ Chain:A ((18-300)) | --------------------------MALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG-TWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIM----MHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLI-----MIFVALRVYREAKEQ----------------------------------------------------SR--VMLMREHKALKTLG----IIMGVFTLCWLPFFLVNIVNVFNRD-LVPDWLFVAFNWLGYANSAMNPIIYCRSP-DFRKAFKRLLA--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4AMJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -280826 for 1931 contacts (-145.4/contact) +
2D Compatibility (PS) -26044 + (NN) -7272 + (LL) 6384
1D Compatibility (HY) -28800 + (ID) 3400
Total energy: -339958.0 ( -176.05 by residue)
QMean score : 0.332
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