Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGSPWNGSDGPEGAREPPWPALPPCDERRCSPFPLGALVPVTAVCLCLFVVGVSGNVVTVMLIGRYRDMRTTTNLYLGSMAVSDLLILLGLPFDLYRLWRSRPWVFGPLLCRLSLYVGEGCTYATLLHMTALSVERYLAICRPLRARVLVTRRRVRALIAVLWAVALLSAGPFLFLVGVEQDPGISVVPGLNGTARIASSPLASSPPLWLSRAPPPSPPSGPETAEAAALFSRECRPSPAQLGALRVMLWVTTAYFFLPFLCLSILYGLIGRELWSSRRPLRGPAASGRERGHRQTVRVLLVVVLAFIICWLPFHVGRIIYINTEDSRMMYFSQYFNIVALQLF-----YLSASINPILYNLISKKYRAAAFKLLLARKSRPRGFHRSRDTAGEVAGDTGGDTVGYTETSANVKTMG |
4EA3 Chain:A ((121-405)) | ---------------------------------PLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGTDILLGF-WPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHP-------TSSKAQAVNVAIWALASVVGVPVAIM----------------GSAQVEDEEIEC-----LVEIPTPQDYWGPVFAICIFLFS-----------------------FIVPVLVISVCYSLMIRRL-RGVRLLSG--SREKDRNLRRITRLVLVVVAVFVGCWTPVQV----FVLAQGLGVQPSSE--TAVAILRFCTALGYVNSCLNPILYAFLDENFKACFR--------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4EA3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -214176 for 2046 contacts (-104.7/contact) +
2D Compatibility (PS) -28065 + (NN) -8305 + (LL) 5428
1D Compatibility (HY) -28400 + (ID) 4500
Total energy: -278018.0 ( -135.88 by residue)
QMean score : 0.273
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