Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MATLPAAETWIDGGGGVGADAVNLTASLAAGAATGAVETGWLQLLDQAGNLSSSPSALGLPVASPAPSQPWANLTNQFVQPSWRIALWSLAYGVVVAVAVL----GNLIVIWIILAHKRMRTVTNYFLVNLAFSDASMAAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYSMTAIAVDRYMAIIDPLKPR--LSATATKIVIGSIWILAFLLAF-PQCLYSKTKVMPGRTLCFVQWPEGPKQHFT---YHIIVIILVYCFPLLIMGITYTIVGITLWGGEIPGDTCDKYHEQLKAKRKVVKMMIIVVMTFAICWLPYHIYFILTAIYQQLNRWKYIQQVYLASFWLAMSSTMYNPIIYCCLNKRFRAGFKRAFRWCPFIKVSSYDELELKTTRFHPNRQSSMYTVTRMESMTVVFDPNDADTTRSSRKKRATPRDPSFNGCSRRNSKSASATSSFISSPYTSVDEYS |
| 4GBR Chain:A ((3-282)) | --------------------------------------------------------------------------------------VWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAE--ETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRV---FQEAKRQLQKIDKFCLK---EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIR----KEVYILLNWIGYVNSGFNPLIY-CRSPDFRIAFQELLCL-------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GBR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -240559 for 2000 contacts (-120.3/contact) +
2D Compatibility (PS) -27189 + (NN) -1061 + (LL) 9872
1D Compatibility (HY) -25600 + (ID) 4400
Total energy: -288937.0 ( -144.47 by residue)
QMean score : 0.281
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